1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tactgcaacgcattcctagtttgatcctttgtacattttccaaactgtacattcttcttacattagttaggaatgctaacaatcctttacttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCTTGA
species | Glycine max |
transcript | GLYMA16G27200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAG GAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGEST: gi|9819306|gb|BE554819.1|BE554819
genomic: CCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGgtaactccta ... ttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAG
EST: TTTGCCTCTTAAAG GAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGEST: gi|192314035|gb|FK007375.1|FK007375
genomic: TTTGCCTCTTAAAGgtaactccta ... ttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAG
EST: TTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAG GAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGEST: gi|31460192|gb|CD402580.1|CD402580
genomic: TTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGgtaactccta ... ttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAG
EST: TTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAG GAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGEST: gi|192314036|gb|FK007376.1|FK007376
genomic: TTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGgtaactccta ... ttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAG
EST: TTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAG GAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAG
genomic: TTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGgtaactccta ... ttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAG
tgtacattcttcttacattagttaggaatgctaacaatcctttacttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCTTGA
tgctaac putative branch site (score: 1)
tcctttacttttgt putative PPT
tttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgcaacgcattcctagtttgatcctttgtacattttccaaactgtacattcttcttacattagttaggaatgctaacaatcctttacttttgtgaagGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCTTGA
- ctgcaac
- - - - -gcattcc
- - - - - - - - - - - - tcctttg
- - - - - - - - - - - - - - - - - - - -ccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgct