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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttattccctgctgtgaaaagtgtagtggcacaagtttacaaacttccttcaggaaatttaaattcctaattgttaatgtctctgataaatgatgttagGTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAA

Basic information

species Glycine max
transcript GLYMA16G27060.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207714252|gb|GD695815.1|GD695815
EST:     CTGAACTATCTTATTTCAGGATCATACCCAGAG                         GTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
genomic: CTGAACTATC-TATTTCAGGATCATACCCAGAGgtttattccc ... atgatgttagGTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
EST: gi|27424892|gb|CA936412.1|CA936412
EST:     AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAG                         GTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
genomic: AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAGgtttattccc ... atgatgttagGTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
EST: gi|298192732|gb|HO033166.1|HO033166
EST:     AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCTAGAG                         GTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
genomic: AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAGgtttattccc ... atgatgttagGTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
EST: gi|5770839|gb|AI974013.1|AI974013
EST:     AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAG                         GTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC
genomic: AGAGTCAATTTGCTCCATCTGAACTATCTATTTCAGGATCATACCCAGAGgtttattccc ... atgatgttagGTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttcaggaaatttaaattcctaattgttaatgtctctgataaatgatgttagGTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAA
          aaatttaaattcctaa  TA-rich tract