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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttgtctcatttttttgagattttttttattctcctgttctttcaattcacctgacctgagtccatttttgaaaatctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAG

Basic information

species Glycine max
transcript GLYMA16G27050.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888883|gb|BQ742096.1|BQ742096
EST:     TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGA
genomic: TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGA
EST: gi|254315172|gb|GR830165.1|GR830165
EST:     TTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
genomic: TTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
EST: gi|192324538|gb|FK016789.1|FK016789
EST:     TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
genomic: TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGC
EST: gi|192294341|gb|FG987270.1|FG987270
EST:     TTTCTTTAAAAAAGAAACTGAAAGATAAAATGGGCTGAATTTCAG                         ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAAGAGACG
genomic: TT-CTTTAAAAAAGAAACTGAAAGATAAAATGG-CTGAATTTCAGgtgggtttgt ... atctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGA-GAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcctgttctttcaattcacctgacctgagtccatttttgaaaatctttgcagACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAG
                    acctgac  putative branch site (score: 3)
                                              tctttgc  putative PPT
                                   atttttgaaaatcttt  TA-rich tract