Sequence
atgc intronic sequence ATGC exonic sequence...gttttatctcaccaaaactgctgatctcatgcatgtaaactgtataaatattgaatgtttgaatatcttgtcgctcatgaaattgtttgttaatttccagTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAG
Basic information
| species | Glycine max |
| transcript | GLYMA16G26360.1 |
| intron # | 7 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 3'ss of exon 7
-----------gttttatctcaccaaaactgctgatctcatgcatgtaaactgtataaatattgaatgtttgaatatcttgtcgctcatgaaattgtttgttaatttccagTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAG
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gttggtaattggttttctcaaattgattctga-actataatttttgaaaggagattctgaactataattgggcctactttaagatgcattatcttttctggtgaga--cagCGTGAGAAATCTGATGAGCAAGATGACAATTCAAGAACCCACATTTGATAGGATGATTGTGGTGTACAG
upper sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G011136_T01 (Zea mays), 3'ss of exon 7
gttttatctcaccaaaactgctgatctcatgcatgtaaactgtataaatattgaatgtttgaatatcttgtcgctcatgaaattgtttgttaatttccagTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAG
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------gttgctcactgttctcagtaaaatttgt-tagactgccaaagtgccaaacatagatctaacatgcagtatctttacacatgtgaaa-----cagTTTGAAAAATCTCATGAGTAAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAG
upper sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 7
-gttttatctcaccaaaactgctgatctcatgcatgtaaactgtat-aaatattgaatgtttgaatatcttgtcgctcatgaaattgtttgttaatttccagTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAG
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tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatgtt--gattactagtttatgactatttccttttgctcctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatattgaatgtttgaatatcttgtcgctcatgaaattgtttgttaatttccagTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAG
tgttaat putative branch site (score: 3)
tttcc CT-rich tract
aaattgtttgttaatt TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttatctcaccaaaactgctgatctcatgcatgtaaactgtataaatattgaatgtttgaatatcttgtcgctcatgaaattgtttgttaatttccagTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - -caccaaa
- - - - - - - - -ctgctga
- - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
