1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttcacattttattaacagcaataacaactgttgcatcattcttgtaattattgtactgcataaaataacttgccatggcaattggtactgttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCTGCTGCACGACGTGAGTTGCAAAGAGAGGCTGAGGAAAATGTGTAATTC
species | Glycine max |
transcript | GLYMA16G26110.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAG AGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCEST: gi|31307808|gb|CD393011.1|CD393011
genomic: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAGgtaattctac ... gttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGC
EST: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAG AGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCEST: gi|209707169|gb|BW656787.1|BW656787
genomic: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAGgtaattctac ... gttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGC
EST: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAG AGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCEST: gi|208239421|gb|GE041293.1|GE041293
genomic: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAGgtaattctac ... gttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGC
EST: CAGGTTCAGACTTCAATTGAGGCATCCAGGAGAAG AGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCEST: gi|8670269|gb|BE191376.1|BE191376
genomic: CAGGTTCAGAC-TCAATTGAGGCATCCAGGAGAAGgtaattctac ... gttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGC
EST: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAG AGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGC
genomic: GAAAATGAGCCTTTACCAGGTTCAGACTCAATTGAGGCATCCAGGAGAAGgtaattctac ... gttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGC
taattattgtactgcataaaataacttgccatggcaattggtactgttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCTGCTGCACGACGTGAGTTGCAAAGAGAGGCTGAGGAAAATGTGTAATTC
aaataac putative branch site (score: 2)
ataaaataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcacattttattaacagcaataacaactgttgcatcattcttgtaattattgtactgcataaaataacttgccatggcaattggtactgttcatgcagAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCTGCTGCACGACGTGAGTTGCAAAGAGAGGCTGAGGAAAATGTGTAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggca