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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatgttagaagctagtttttttttatattttggttgcacttaaataatttttctcacattgctgaccatggttctgagtgttaatttccccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCGTGCCTTGAACCTATCTACCATCATCAATTGGTACGCTTGGTATGATAAT

Basic information

species Glycine max
transcript GLYMA16G26070.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019406|gb|CX706148.1|CX706148
EST:     CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAG                         TGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
genomic: CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGgtatattctg ... ccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
EST: gi|10846445|gb|BF071337.1|BF071337
EST:     CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAG                         TGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATGCG
genomic: CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGgtatattctg ... ccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
EST: gi|6726211|gb|AW310565.1|AW310565
EST:     CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAG                         TGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
genomic: CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGgtatattctg ... ccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
EST: gi|51336355|gb|CO980221.1|CO980221
EST:     CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAG                         TGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
genomic: CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGgtatattctg ... ccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
EST: gi|208305886|gb|GE109565.1|GE109565
EST:     GAAGGTGGTATCAGAATATGGGTATTCAG                         TGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
genomic: GAAGGTGGTATCAGAATATGGGTATTCAGgtatattctg ... ccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
EST: gi|15285283|gb|BI469174.1|BI469174
EST:     CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAG                         TGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
genomic: CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGgtatattctg ... ccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
EST: gi|58016301|gb|CX703043.1|CX703043
EST:     CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAG                         TGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG
genomic: CCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGgtatattctg ... ccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttttctcacattgctgaccatggttctgagtgttaatttccccatctgcagTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCGTGCCTTGAACCTATCTACCATCATCAATTGGTACGCTTGGTATGATAAT
                                        tttccccatct  CT-rich tract
                                  tgttaattt  TA-rich tract