Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatctaagagtaatagctttaatagtctattaggatgaaagtcatgaaactatagttaagcctatctgcttttgctgagttgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTTGGGTGCCGGTTGCCTCGCCCTGGGCAG

Basic information

species Glycine max
transcript GLYMA16G25820.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25820.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 3'ss of exon 10
gtaaaatctaagagtaatagctttaatagtctattaggatgaaagtcatgaaactatagttaagcctatctgcttttgctgagttgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTTGGGTGCCGGTTGCCTCGCCCTGGGCAG-------------
                     |  ||    |  | | |||     || |  || |  ||  ||  || | ||  |||    | || ||||   |  |||    | |||||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||||| || ||  |  |||| || || |||             
--------------------gtaaaaggagccctcatgata----tcttttaattg-aggaaattctgtatggatttt---attttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGGTTGGATCCCATG

upper sequence: GLYMA16G25820.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 7
gtaaaatctaagagtaatagctttaatagtctattaggatgaaagtcatgaaactatagttaagcctatctgcttttgctgagttgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTTGGGTGCCGGTTGCCTCGCCCTGGGCAG
                     |  ||    |    | |||     || |  || |  ||  ||  || | ||  |||    | || ||||   |  |||    | |||||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||||| || ||  |  |||| || || |||
--------------------gtaaaaggagcccccatgata----tcttttaattg-aggaaattctgtatggatttt---attttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285798|gb|BE023357.1|BE023357
EST:     CTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAG                         GCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAAC
genomic: CTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAGgtaaaatcta ... ccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAAC