1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agatgcttgcagctaaagtcggaattgaattggtttaattaaaaacatctcaatctttttctaaactgtttttggctttggtctgatgacttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
species | Glycine max |
transcript | GLYMA16G25600.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAGCCAACAG GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGEST: gi|23064117|gb|BU578890.1|BU578890
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: TGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACATG TANT-TGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGEST: gi|20448522|gb|BQ252646.1|BQ252646
genomic: TGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACA-Ggtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGEST: gi|7924295|gb|AW830321.1|AW830321
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGEST: gi|9565806|gb|BE475315.1|BE475315
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
catctcaatctttttctaaactgtttttggctttggtctgatgacttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
cttctccgt CT-rich tract
aatctttttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgcttgcagctaaagtcggaattgaattggtttaattaaaaacatctcaatctttttctaaactgtttttggctttggtctgatgacttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG