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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agggggccatcttctattctgtctatgcatgtgctttgtctaaattctagtagaggaaaatggtggatattctcttatacttgcttatttgtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAATAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCA

Basic information

species Glycine max
transcript GLYMA16G25450.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207779717|gb|GD752549.1|GD752549
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|193356193|gb|FK321394.1|FK321394
EST:     CGGCTGGGGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGC
genomic: CGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGC
EST: gi|120530268|gb|EH258402.1|EH258402
EST:     TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAA
EST: gi|14258923|gb|BG881840.1|BG881840
EST:     TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCT
genomic: TCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTgtaagtttta ... gtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagtagaggaaaatggtggatattctcttatacttgcttatttgtggtggcagTATGAACCAGAGCTGTTTCCAGGGCTAATCTACCGTATGAAGCAACCTAAAATAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCA
                             ttatactt  TA-rich tract