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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgttgttcgtgacttgtgaattttctcaatcgagtggatttttaaaggtggatcttggcaattaaattttgtagatatgactaacatatagGTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATG

Basic information

species Glycine max
transcript GLYMA16G25390.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25390.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 8
gttagtgttgttcgtgacttgtgaattttctcaatcgagtggatttttaaaggtggatcttggcaattaaattttgtagatatgactaa---catatagGTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATG
      ||   |   |  |||    ||  || ||||   || ||||| ||   |||||      ||||| || |||   | ||| ||      || |||||     |||||||||| ||    |||||||||||| |||||||||| |||||||| || || || |||||||||
------gtgagtttcgctttgcaggttccctaaatca--tgtattttgaagcatggatgaaactaattagatgttgggaacatggctggaattatttagGTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398508|gb|EV268379.1|EV268379
EST:     GTGTCTCGGTTATTGATTGAAAACACTAGCACTGTCTGTGGG                         GTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAAT
genomic: GTGTCTCGGTTATTGATTGAAAACACTAGCACTGTCTGTGGGgttagtgttg ... taacatatagGTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAAT
EST: gi|208217348|gb|GE009808.1|GE009808
EST:     GTGTCTCGGTTATTGATTGAAGACACTAGCACTGTCTGTGGG                         GTGACTTTGGCTGATGGTACTGAAGTGCATTCTTACAAATTGTTTTGTCTA
genomic: GTGTCTCGGTTATTGATTGAAAACACTAGCACTGTCTGTGGGgttagtgttg ... taacatatagGTGACTTTGGCTGATGGTACTGAAGTGCATTCTT-CAA-TTGTTTTGTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttttaaaggtggatcttggcaattaaattttgtagatatgactaacatatagGTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATG
                                          gactaac  putative branch site (score: 1)
                       aattaaattttgtaga  TA-rich tract