1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaactttttagaagtacacttttcacccttgcactgaattaagtatgaaggtgaaaagagtactttaaccagtttctcaaaacagatgatcttttgaaactttctttcaggaaattcttgtccaactgaatactatatgagttttcttatttgatgggagcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA
species | Glycine max |
transcript | GLYMA16G25380.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATEST: gi|193497482|gb|FK458306.1|FK458306
genomic: TTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATEST: gi|208297974|gb|GE093231.1|GE093231
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATEST: gi|193456502|gb|FK421806.1|FK421806
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: TGAGGTCATTGATAATCTG ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATEST: gi|192321595|gb|FK013939.1|FK013939
genomic: TGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATTTG ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATEST: gi|193583802|gb|FK543786.1|FK543786
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: TGAGGTCATTGATAATCTG ATTGAC-AGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATEST: gi|192321596|gb|FK013940.1|FK013940
genomic: TGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
EST: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG ATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
genomic: GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGgtaaactttt ... agcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACAT
attcttgtccaactgaatactatatgagttttcttatttgatgggagcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA
atttgat putative branch site (score: 5)
cttctc putative PPT
ttttcttatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactttttagaagtacacttttcacccttgcactgaattaagtatgaaggtgaaaagagtactttaaccagtttctcaaaacagatgatcttttgaaactttctttcaggaaattcttgtccaactgaatactatatgagttttcttatttgatgggagcttctcagATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA