Sequence
atgc intronic sequence ATGC exonic sequence...gttcaagttgcatggagcatcttagaccatagactttattatgaacgaccccttattttggctttctttgtttttcttttttccccctttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG
Basic information
species | Glycine max |
transcript | GLYMA16G25150.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G25150.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
------gttcaagttgcatggagcatcttagaccatagactttattatgaacgaccccttattttggctttctttgtttttcttttttccccctttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG
||||| ||| || || ||| || || || | || | | || | | || || | |||| || |||||||||||||||||||||| |||||||||||||| || |
gtattggttcatgttc--tgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaatgttctaatt----------aatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA
upper sequence: GLYMA16G25150.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
gttca-agttgcatggagcatcttag--accatagactttattatgaacgaccccttattttggctttctttgtttttcttttttccccctttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG----------------------------------------------------------------
|| || ||| ||| | | | ||| |||| || | | || ||| ||| ||| | ||||| | || || ||||||||||||||||||||||||||||||||||| |
gtgcagagtagcaaacctttgttcaataattgtagccttt-ttgtttctgtaaccctatc--aattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgaccccttattttggctttctttgtttttcttttttccccctttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG
ttattttggctttctt CT-rich tract
tttgtttttctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcaagttgcatggagcatcttagaccatagactttattatgaacgaccccttattttggctttctttgtttttcttttttccccctttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG
- - - - -gcatgga