1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagtgtattgtagagagccattgataactcttctttctacacttaaaaagttggtaagttgtggactcctttcattgaccagtttgtttatacttttcagTTTGATGATATAGGATCACATGGAACCAAAGTTGTAATATACAATTTGTGGTTGAATGATGAAGGGATATATGAATTGA
species | Glycine max |
transcript | GLYMA16G24450.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATAGAATATAGGATCACATGGAAEST: gi|207772650|gb|GD744446.1|GD744446
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGAT-GA-TATAGGATCACATGGAA
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAEST: gi|208242910|gb|GE041544.1|GE041544
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATA
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAGGATCACATGGEST: gi|193551643|gb|FK506846.1|FK506846
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATAGGATCACATGG
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAGGAEST: gi|193481340|gb|FK447831.1|FK447831
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATAGGA
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAGGATCACATGGAACCAAAGTTGTAATEST: gi|207777800|gb|GD749763.1|GD749763
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATAGGATCACATGGAACCAAAGTTGTAAT
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAGGATCACATGGAACCAAAGTTGTAATATACAATTTGTGGEST: gi|193708757|gb|FK648551.1|FK648551
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATAGGATCACATGGAACCAAAGTTGTAATATACAATTTGTGG
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAGGATCACATGGAACCEST: gi|193642573|gb|FK591535.1|FK591535
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATAGGATCACATGGAACC
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAGGATCACATGGAACCAAAGTTGTAATATACAATTTEST: gi|208029404|gb|GD827862.1|GD827862
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATAGGATCACATGGAACCAAAGTTGTAATATACAATTT
EST: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAG TTTGATGATATAGGATCACATGGAACCAAAGTTG
genomic: CAATTCTTGATTGGTCTCCCTTCACATCAAAGGAGGAGCTCATGCTTCAGgttcatttca ... tacttttcagTTTGATGATATAGGATCACATGGAACCAAAGTTG
aaaagttggtaagttgtggactcctttcattgaccagtttgtttatacttttcagTTTGATGATATAGGATCACATGGAACCAAAGTTGTAATATACAATTTGTGGTTGAATGATGAAGGGATATATGAATTGA
cattgac putative branch site (score: 3)
tacttttc putative PPT
tttgtttatactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtgtattgtagagagccattgataactcttctttctacacttaaaaagttggtaagttgtggactcctttcattgaccagtttgtttatacttttcagTTTGATGATATAGGATCACATGGAACCAAAGTTGTAATATACAATTTGTGGTTGAATGATGAAGGGATATATGAATTGA
- - - - - - - - gccattg
- - - - - - - - - - - - - - - - - -tctacac
- - - - - - - - - - - - - - - - - - - - - - - - -gttggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgg