Sequence
atgc intronic sequence ATGC exonic sequencegtacgactgattcactcagattacagaaaaatatagaagaattactctgttacttgaacaataattggaaaccaaaatgatattttttttcgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGTTCATCCCAAACAAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
Basic information
species | Glycine max |
transcript | GLYMA16G24250.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G24250.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 3'ss of exon 9
gtacgactgattcactcagattacagaaaaatatagaa-gaattactctgttacttgaacaataattggaaaccaaaatgatattttttttcgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGTTCATCCCAAACAAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
| | | || | | | | | || || || |||| || | | | | || | | || | | | ||||||||| ||||||||||||| ||||| ||| |||| ||| || |||||||| || ||||||||||| ||| | || ||||| || ||||||||||| |
-------------gtatatacttttaaatcttccattatgtactatcctaaaaca-aaacatgaaatatattcatagattaactaattatcc---tgcagAATTTCATTGATCTTGCTGGAAGTGAACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACAC
upper sequence: GLYMA16G24250.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 7
gtacgactgattcactcagattacagaaaaata-tagaagaattactct-----gttacttgaacaataattggaaaccaa-aatgatattttttttcgg--------gtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGTTCATCCCAAACAAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
||| | | ||| | | | ||| ||| |||| | | | |||| | || ||| || || | | ||| | | || | ||| ||||||| |||||||||||||| ||||||||| |||| || || |||||||| || ||| ||||||| |||||||||||||| || |||||| |||| |
gtatggatcattaattta--ttatagaccaatagttcagctaatacttgcagaaaacaaacaaataatgataggcatatagcaatcctcactcttattaaccctgcctgtatagAATTTTGTTGATCTTGCTGGAAGTGAGCGTGCATCTCAGTCATTATCAGCTGGCACAAGGCTGAAAGAAGGTTGCCACATAAACCGCAGTTTATTAACCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctgttacttgaacaataattggaaaccaaaatgatattttttttcgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGTTCATCCCAAACAAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
tattttttttc CT-rich tract
aaaccaaaatgatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgactgattcactcagattacagaaaaatatagaagaattactctgttacttgaacaataattggaaaccaaaatgatattttttttcgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGTTCATCCCAAACAAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG