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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcagaaaatctttctctgattttatgatatctaatgattctcaaccttcttaatctgatttccttttctgatatacaacagGAGGAAGGAGATCTTCTTTGTTTGGGAATCCAGAAAAGTGACAGCGTGAATATCATTGGAC

Basic information

species Glycine max
transcript GLYMA16G23140.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341495|gb|CO982812.1|CO982812
EST:     GTGGAGATGATTATTATGTCATGGATCCTATAATACAAGTTTCTAGTGAG                         GAGGAAGGAGATCTTCTTTGTTTGGGAATCCAGAAAAGTGACAGCGTGAAT
genomic: GTGGAGATGATTATTATGTCATGGATCCTATAATACAAGTTTCTAGTGAGgtaagagcag ... tatacaacagGAGGAAGGAGATCTTCTTTGTTTGGGAATCCAGAAAAGTGACAGCGTGAAT
EST: gi|120495891|gb|EH224058.1|EH224058
EST:     GTGGAGATGATTATTATGTCATGGATCCTATAATACAAGTTTCTAGTGAG                         GAGGAAGGAGATCTTCTTTGTTTGGGAATCCAGAAAAGTGACAGCGTGAAT
genomic: GTGGAGATGATTATTATGTCATGGATCCTATAATACAAGTTTCTAGTGAGgtaagagcag ... tatacaacagGAGGAAGGAGATCTTCTTTGTTTGGGAATCCAGAAAAGTGACAGCGTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctaatgattctcaaccttcttaatctgatttccttttctgatatacaacagGAGGAAGGAGATCTTCTTTGTTTGGGAATCCAGAAAAGTGACAGCGTGAATATCATTGGAC
                                       ttctgat  putative branch site (score: 3)
                                tttccttttctgat  CT-rich tract
     taatgatt  TA-rich tract