1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aactctattgtcttcatatttttggtttttggtttcaatttacataagcttaataattgtttttagaatggtgctaatgggttggtcaactgttcttcagATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTG
species | Glycine max |
transcript | GLYMA16G19350.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAG ATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCEST: gi|10234037|gb|BE802925.1|BE802925
genomic: CTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAGgtataacatt ... tgttcttcagATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCC
EST: TTACCCTGGCAGATGCTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAG ATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCEST: gi|7030141|gb|AW459924.1|AW459924
genomic: TTACCCTGGCAGATGCTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAGgtataacatt ... tgttcttcagATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCC
EST: TTACCCTGGCAGATGCTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAG ATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCC
genomic: TTACCCTGGCAGATGCTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAGgtataacatt ... tgttcttcagATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCC
aagcttaataattgtttttagaatggtgctaatgggttggtcaactgttcttcagATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTG
tgctaat putative branch site (score: 2)
ctgttcttc putative PPT
taataattgtttttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactctattgtcttcatatttttggtttttggtttcaatttacataagcttaataattgtttttagaatggtgctaatgggttggtcaactgttcttcagATTATTGACTTGGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTG
- - - - -gtcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgg