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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcttacattgttttccacccactattatctgctaattttgttttttccttcattctttactttttcctccatgcattgggttttattcaaaatatttttttcctcctgcagAGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAG

Basic information

species Glycine max
transcript GLYMA16G15580.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176394|gb|HO026629.1|HO026629
EST:     GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAG                         AGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC
genomic: GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAGgtagcttaca ... cctcctgcagAGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC
EST: gi|9565017|gb|BE474526.1|BE474526
EST:     GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAG                         AGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC
genomic: GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAGgtagcttaca ... cctcctgcagAGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC
EST: gi|5509259|gb|AI855817.1|AI855817
EST:     GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAG                         AGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC
genomic: GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAGgtagcttaca ... cctcctgcagAGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC
EST: gi|8283377|gb|BE020938.1|BE020938
EST:     GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAG                         AGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC
genomic: GAAATTTTCAGTGGCAGATGATGTTCAAATTGATGGTACAGgtagcttaca ... cctcctgcagAGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttttcctccatgcattgggttttattcaaaatatttttttcctcctgcagAGGTTAGTGCCATCAAACCATCACGTGAACAAAATGTGGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAG
                                    tatttttttcctcctg  CT-rich tract
 attgggttttattcaa  TA-rich tract