1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccgtttgccctactattataattgaatctgttcaatgtttttaaatatgctgctactatttgatttcatttatttatttgttatctattcattgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTGACGCTGTTGATGCAAGCACAATAAAACGTGTTGCTAACCGATTTATTT
species | Glycine max |
transcript | GLYMA16G10360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAG CTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTEST: gi|17402137|gb|BM178919.1|BM178919
genomic: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAGgtacaataaa ... attgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATT
EST: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAG CTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTEST: gi|58022276|gb|CX709017.1|CX709017
genomic: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAGgtacaataaa ... attgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATT
EST: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAG CTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTEST: gi|58022560|gb|CX709301.1|CX709301
genomic: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAGgtacaataaa ... attgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATT
EST: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAG CTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTEST: gi|12691055|gb|BG157391.1|BG157391
genomic: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAGgtacaataaa ... attgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATT
EST: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAG CTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTEST: gi|7478537|gb|AW666305.1|AW666305
genomic: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAGgtacaataaa ... attgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATT
EST: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAG CTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATT
genomic: TGCTCCACATAGATGGAACAAGTCCAGTAGCTGAAGATATTGGGCGTCAGgtacaataaa ... attgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATT
tatgctgctactatttgatttcatttatttatttgttatctattcattgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTGACGCTGTTGATGCAAGCACAATAAAACGTGTTGCTAACCGATTTATTT
atttgat putative branch site (score: 5)
ttgtttc putative PPT
tatttgatttcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgtttgccctactattataattgaatctgttcaatgtttttaaatatgctgctactatttgatttcatttatttatttgttatctattcattgtttcagCTACTCACCTACGGCAGAAGAATCCCATTTGCAGAATTGTTTGCTAGAATTGACGCTGTTGATGCAAGCACAATAAAACGTGTTGCTAACCGATTTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - ttgccct
- - - - - - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - atgctgc