1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttaacttgcatggtatacatttgcatctatggctgacactgaacttattatattcttaaatatgcctggattgctctgacaattattgttacctgccagGTGCGAAATGAAGTACGTGCTGCTGGAGATGGATCGAATCTTACGGCCTAGTGGGTATGCAATCATTCGCGAATCCAGTTATTTTACGGATGCTATCACA
species | Glycine max |
transcript | GLYMA16G08120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACATATGACTTGCTTCATCTTGATAGACTCTTCACCCTAGAAAGCCACAG GTGCGAAATGAAGTACGTGCTGCTGGAGATGGATCGAATCTTACGGCCTAGEST: gi|105634892|gb|DW247700.1|DW247700
genomic: ACATATGACTTGCTTCATCTTGATAGACTCTTCACCCTAGAAAGCCACAGgtgactatgt ... tacctgccagGTGCGAAATGAAGTACGTGCTGCTGGAGATGGATCGAATCTTACGGCCTAG
EST: ACATATGACTTGCTTCATCTTGATAGACTCTTCACCCTAGAAAGCCACAG GTGCGAAATGAAGT
genomic: ACATATGACTTGCTTCATCTTGATAGACTCTTCACCCTAGAAAGCCACAGgtgactatgt ... tacctgccagGTGCGAAATGAAGT
ttattatattcttaaatatgcctggattgctctgacaattattgttacctgccagGTGCGAAATGAAGTACGTGCTGCTGGAGATGGATCGAATCTTACGGCCTAGTGGGTATGCAATCATTCGCGAATCCAGTTATTTTACGGATGCTATCACA
ctctgac putative branch site (score: 3)
atattcttaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaacttgcatggtatacatttgcatctatggctgacactgaacttattatattcttaaatatgcctggattgctctgacaattattgttacctgccagGTGCGAAATGAAGTACGTGCTGCTGGAGATGGATCGAATCTTACGGCCTAGTGGGTATGCAATCATTCGCGAATCCAGTTATTTTACGGATGCTATCACA
- - - - gcatggt
- - - - - - - - - catttgc
- - - - - - - - - - - - - - - - -ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctctg