1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agttcactagatattacgagattttaatcatattttttacattgtatctaagttcgtgatatgaatatgatgagaggataaaaattttgttcttttgcagACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG
species | Glycine max |
transcript | GLYMA16G05340.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTAGTAAGAGGTGCTGCTCGTAACATGGTCCCCATTCTAAACGGGTCTG ACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGEST: gi|208296452|gb|GE089664.1|GE089664
genomic: AGTAGTAAGAGGTGCTGCTCGTAACATGGTCCCCATTCTAAACGGGTCTGgtaagttatt ... tcttttgcagACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAG
EST: TAAACGGGTCTG AEST: gi|208296452|gb|GE089664.1|GE089664
genomic: TAAACGGGTCTGgtaagttatt ... tcttttgcag-
EST: TAAACGGGTCTG A
genomic: TAAACGGGTCTGgtaagttatt ... tcttttgcag-
atctaagttcgtgatatgaatatgatgagaggataaaaattttgttcttttgcagACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG
ttttgttcttttgc CT-rich tract
ataaaaattttgttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttcactagatattacgagattttaatcatattttttacattgtatctaagttcgtgatatgaatatgatgagaggataaaaattttgttcttttgcagACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa