1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatattggaattggaagtctcaaacacattattagtctcttctaattctaattaatgctactgcaaagccattctaatcacttcatcatttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATTTTGAGAATGCAGCAAAGGTTGCCTGTAACACAGAATTAAAGGATCTCA
species | Glycine max |
transcript | GLYMA16G04770.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCTTACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31465540|gb|CD407568.1|CD407568
genomic: ACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|209718019|gb|BW671850.1|BW671850
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|16345490|gb|BI971085.1|BI971085
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31472483|gb|CD414511.1|CD414511
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|23063614|gb|BU578587.1|BU578587
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31459452|gb|CD401480.1|CD401480
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31470653|gb|CD412681.1|CD412681
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTCGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31463475|gb|CD405503.1|CD405503
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31457448|gb|CD399476.1|CD399476
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCTAACGCCCCCAATGCCCAAGTTCGTCCTGTGGATEST: gi|31307120|gb|CD392323.1|CD392323
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: CTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCTCCTATGCCAAAGTTCGTCCTGTGGATEST: gi|31467978|gb|CD410006.1|CD410006
genomic: CTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31473162|gb|CD415190.1|CD415190
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCNAACGCCCCCAATGCCNAAGTTCGTCCTGTGGATEST: gi|14258524|gb|BG881432.1|BG881432
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GACAAA-CAACTTTTTTATTGCCTCATTNTTCTTAGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGEST: gi|209721792|gb|BW666399.1|BW666399
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCG
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|31473169|gb|CD415197.1|CD415197
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACGACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCCAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATEST: gi|22524763|gb|BU083574.1|BU083574
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
EST: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAG GCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
genomic: GAGAAAACAACTTTTTTATTGCCTCATTTTTCTTTGAAGTTGCCGATGAGgtatcattat ... ttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGAT
attctaattaatgctactgcaaagccattctaatcacttcatcatttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATTTTGAGAATGCAGCAAAGGTTGCCTGTAACACAGAATTAAAGGATCTCA
ttctaat putative branch site (score: 2)
tttgttc putative PPT
aattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatattggaattggaagtctcaaacacattattagtctcttctaattctaattaatgctactgcaaagccattctaatcacttcatcatttgttcatagGCTGGTTTTGTTGATCCAAACGCCCCCAATGCCAAAGTTCGTCCTGTGGATTTTGAGAATGCAGCAAAGGTTGCCTGTAACACAGAATTAAAGGATCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG