1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtaggaagtcaaagctaacctttatttccatcttatacaaattaacttctaatattttgatggtattccatagaacatattatgttgtttatttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAATTCAAGGCCGCAGCTAAGCGAGCGTGTCAAGTCAAATTTGAGGATGCTC
species | Glycine max |
transcript | GLYMA16G04760.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAG GCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAAEST: gi|6227837|gb|AW156436.1|AW156436
genomic: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAGgtattgattg ... atttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAA
EST: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAG GCTGGTATAGCCGATGCAAGTTAAAACCAGTTCCAAAGTTTATCCTGCGGAEST: gi|16349242|gb|BI974837.1|BI974837
genomic: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAGgtattgattg ... atttgtatagGCTGGTATAGCCGATGCAAG-TAAAACCAGTTCCAAAGTTTATCCTGCGGA
EST: ACAAAAAGTCCTTTATGTTACTACATACTTTCTATTATCTGGTTATACAG GCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAAEST: gi|20207871|gb|BQ133960.1|BQ133960
genomic: ACAAAAAGTCCTTTATGTTACTACAT-CTTTCTATTATCTGGTTATACAGgtattgattg ... atttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAA
EST: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAG GCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAAEST: gi|12690980|gb|BG157316.1|BG157316
genomic: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAGgtattgattg ... atttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAA
EST: GACATAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAG GCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCEST: gi|213594114|gb|DB981414.1|DB981414
genomic: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAGgtattgattg ... atttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGC
EST: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGCTATACAG GCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAAEST: gi|8403388|gb|BE059022.1|BE059022
genomic: GACAAAAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAGgtattgattg ... atttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAA
EST: ACAANAAA-TNCTTTATGTTACTACATCTTTCTATTATCTTGTTATACAG GCTGGTATANCCGATGCAAGTAAAACCA
genomic: ACAA-AAAGTCCTTTATGTTACTACATCTTTCTATTATCTGGTTATACAGgtattgattg ... atttgtatagGCTGGTATAGCCGATGCAAGTAAAACCA
cttctaatattttgatggtattccatagaacatattatgttgtttatttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAATTCAAGGCCGCAGCTAAGCGAGCGTGTCAAGTCAAATTTGAGGATGCTC
tttattt CT-rich tract
atattatgttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaagtcaaagctaacctttatttccatcttatacaaattaacttctaatattttgatggtattccatagaacatattatgttgtttatttgtatagGCTGGTATAGCCGATGCAAGTAAAACCAGTTCCAAAGTTTATCCTGCGGAATTCAAGGCCGCAGCTAAGCGAGCGTGTCAAGTCAAATTTGAGGATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - -gctaacc
- - - - - - - - - - - - -ttccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt