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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttttatttcaactgccctttttgttaacttggatatgttgtaatatttattctgctgttactcatggcttcttttctttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCAGACTGGATTCTCAACAAAAGAAGCTCAACCTTCCAATCCTGCCAACCA

Basic information

species Glycine max
transcript GLYMA16G04240.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347878|gb|BI973473.1|BI973473
EST:     CGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|8670420|gb|BE191527.1|BE191527
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|8669740|gb|BE190847.1|BE190847
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|14258702|gb|BG881610.1|BG881610
EST:     CCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|16105053|gb|BI892793.1|BI892793
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|22522024|gb|BU080835.1|BU080835
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|23728244|gb|BU762169.1|BU762169
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|22521984|gb|BU080795.1|BU080795
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|9564613|gb|BE474122.1|BE474122
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAANGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|213603185|gb|DB981039.1|DB981039
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|192333042|gb|FK024691.1|FK024691
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|192333296|gb|FK026177.1|FK026177
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|213615221|gb|DB965029.1|DB965029
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|12689966|gb|BG156302.1|BG156302
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|9258931|gb|BE347078.1|BE347078
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|7640038|gb|AW734347.1|AW734347
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|209727264|gb|BW663210.1|BW663210
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|9204537|gb|BE330761.1|BE330761
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|15286256|gb|BI470147.1|BI470147
EST:     CTTCAAGGAAGTTTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|15814229|gb|BI786504.1|BI786504
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|10846169|gb|BF069133.1|BF069133
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAAGGTTCAGATCATCGCCGTGCAACACATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|9259682|gb|BE347829.1|BE347829
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|15286907|gb|BI470798.1|BI470798
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCCG-TCGTATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCT-GCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGC
EST: gi|26048073|gb|CA784670.1|CA784670
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|7588477|gb|AW704334.1|AW704334
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|13252819|gb|BG363722.1|BG363722
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|6502045|gb|AW203418.1|AW203418
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|6454893|gb|AW185503.1|AW185503
EST:     TCAAGGAAAG-CTTCTCCAAGAGTGACCA-CGGAGGCTGT-CAGAAGGCT                         GCTGCTGCAATTGAAGGGT
genomic: TCAAGGAA-GTCTTCTCCAAGAGTGACCAACG-AGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCA-TTGAAGGGT
EST: gi|20815113|gb|BQ299591.1|BQ299591
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|9820119|gb|BE555629.1|BE555629
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|26057207|gb|CA800121.1|CA800121
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|7924713|gb|AW830739.1|AW830739
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|13477481|gb|BG507350.1|BG507350
EST:     CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgttgtaatatttattctgctgttactcatggcttcttttctttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCAGACTGGATTCTCAACAAAAGAAGCTCAACCTTCCAATCCTGCCAACCA
                         ttactcatggcttctt  CT-rich tract
     ttgtaatatttattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgcttttatttcaactgccctttttgttaacttggatatgttgtaatatttattctgctgttactcatggcttcttttctttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCAGACTGGATTCTCAACAAAAGAAGCTCAACCTTCCAATCCTGCCAACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA