1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagtagttgtaggtttagggccaaaaatttatgtagataaaaaatcataggatgttggtgttcttcgttattgattatgttcatgtttgttctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGGTTGCGGGCAAGGTTTAAGGCTGCTTATCCAGATGTGGAGGTGCAGCCA
species | Glycine max |
transcript | GLYMA16G03690.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGG ATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGEST: gi|151397740|gb|EV267613.1|EV267613
genomic: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggttttc ... tctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
EST: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGG ATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGEST: gi|192306781|gb|FG998148.1|FG998148
genomic: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggttttc ... tctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
EST: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGG ATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGEST: gi|51341858|gb|CO983175.1|CO983175
genomic: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggttttc ... tctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
EST: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGG ATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGEST: gi|5058217|gb|AI736693.1|AI736693
genomic: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggttttc ... tctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
EST: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGG ATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGEST: gi|151403265|gb|EV273075.1|EV273075
genomic: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggttttc ... tctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
EST: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGG ATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
genomic: GGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggttttc ... tctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
cataggatgttggtgttcttcgttattgattatgttcatgtttgttctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGGTTGCGGGCAAGGTTTAAGGCTGCTTATCCAGATGTGGAGGTGCAGCCA
tattgat putative branch site (score: 3)
tttgttct putative PPT
ttattgattatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtagttgtaggtttagggccaaaaatttatgtagataaaaaatcataggatgttggtgttcttcgttattgattatgttcatgtttgttctgcaccagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGGGTTGCGGGCAAGGTTTAAGGCTGCTTATCCAGATGTGGAGGTGCAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - -gccaaaa
- - - - - - - - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt