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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgtctcttggtatttcattttgaatatgatttatctacaccaatccttcacatttactcaatcttcttcagGTACATGATATCATCCAATGTTGGGGAAGTAATATCCATATTCTTGACTGCTGCTCTGGGGATCCCAGAATGCATGATTCCAGTGCAACTTCTGTGGGTG

Basic information

species Glycine max
transcript GLYMA16G02490.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02490.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttatgtctc---ttggtatttcattttgaatatgatttatctacaccaatccttcacatttactcaatcttcttcagGTACATGATATCATCCAATGTTGGGGAAGTAATATCCATATTCTTGACTGCTGCTCTGGGGATCCCAGAATGCATGATTCCAGTGCAACTTCTGTGGGTG
|||| | ||||||    || || |||  |||    |  |  |  || ||| | | ||||||  |   |||||| | |   ||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||| ||| | || |||||||| ||||| || ||||| ||||||||||| 
gtatat-atgtcttaagttcgttttttttttccctttcgggtagtcaacatctaaccttca-gtgacctcaatatgc---agGTATATGATATCTTCCAATGTTGGGGAGGTTATATCCATTTTCTTAACTGCTGCACTGAGCATACCAGAATGTATGATACCTGTGCAGCTTCTGTGGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaatatgatttatctacaccaatccttcacatttactcaatcttcttcagGTACATGATATCATCCAATGTTGGGGAAGTAATATCCATATTCTTGACTGCTGCTCTGGGGATCCCAGAATGCATGATTCCAGTGCAACTTCTGTGGGTG
                                             tcttcttc  CT-rich tract
      aatatgatttatcta  TA-rich tract