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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgtctaacttttctttttctttttccatttttctgcttatatttacatggcattgattacattctgagttgacttgttcacaattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTT

Basic information

species Glycine max
transcript GLYMA16G01790.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296122|gb|FG989482.1|FG989482
EST:     ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCAT                         GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
genomic: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
EST: gi|208341439|gb|GE139065.1|GE139065
EST:     TGACCTGCCTTCTAGTACTTATGTAGCTCACTTTCTAGCATAAGAACCAT                         GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
genomic: TGACCTGCC-TC-AG-AC-TATG-AGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
EST: gi|213603106|gb|DB960411.1|DB960411
EST:     ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCAT                         GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
genomic: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
EST: gi|208306809|gb|GE107940.1|GE107940
EST:     ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCAT                         GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
genomic: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatttacatggcattgattacattctgagttgacttgttcacaattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTT
                              agttgac  putative branch site (score: 4)
                                             aattatgta  TA-rich tract