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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaaagttttagttgtgaagttcttttatttatattatatggttaatggtttaccatgtttggttttttacttttttatttatcctttgacttttgcatgaggaattgatatctgtgaataacaataaatgtggattattattactttatagctttatactgatgttttcaatttccgaatgcagCATATTAACAGGGCTTCTTTCATTCATG

Basic information

species Glycine max
transcript GLYMA16G01680.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307581|gb|FG999620.1|FG999620
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCGTG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ccgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|15661834|gb|BI699205.1|BI699205
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ccgaatgcagCATATTAACAGGGCTTCTTTCATTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggattattattactttatagctttatactgatgttttcaatttccgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
                           tactgat  putative branch site (score: 2)
                                          tttcc  putative PPT
     ttattattactttata  TA-rich tract