Sequence
atgc intronic sequence ATGC exonic sequencegtaattgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCAG
Basic information
species | Glycine max |
transcript | GLYMA16G01590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G01590.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 3'ss of exon 6
----gtaattgtctgttctagg--aataaatatgtctttgttatttgaactatggcactagtt-----tttacagttgttgtcattactttt-cagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCAG
|| ||| ||| || | | ||| | | | |||| | || | || || || | | ||| |||||| |||||||| |||| || ||||| |||||||| ||||| ||||| || || || ||||||||||| || | ||||| ||||| ||||||||||| | ||
gtgagttattttcttttttgttttgttttataagacatctatattacagcttcaataataattagaaacctaaatgcatgctcaaaactttttcagAGTTACAGGTGCCGGTCATGTGAGATGCCATCAGAAGCTCATGTTCACTGTTACACTCATCGACAAGGCAGCCTTACGATATCTGTCAAGAAACTTCAAG
upper sequence: GLYMA16G01590.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 7
gtaat-tgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCAG
|||| | |||||| || | | || | | | || | | || | | | | || || |||||||| | |||| ||||| || |||||||| ||||||||||| ||||| ||||||||| |||| || || || || || ||||| || ||||| ||||
gtaaggtttctgtttctcacattttcactctctcaataaa-aacttgtaacattctgtaagactgaggaagcctttg-ttatcagAGTTTCCGGTGCCGATCTTGCGAGATGCCATCAGAAGCACATGTTCATTGTTATACTCATAGACAAGGCACCCTCACGATTTCCGTTAAAAAACTGCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254315776|gb|GR825585.1|GR825585EST: GCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAG AGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGC
genomic: GCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaattgtct ... tacttttcagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCAG
ttacttttc CT-rich tract
ttatttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA