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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatagttttagaaaatcaaattgaattaattattttgaatattactcataatgcatatataatccttttatgaaggtgttttaatatcaacacttggtttagattttgttgtataatctttgattcatacatttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAG

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588618|gb|DB957654.1|DB957654
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|151410306|gb|EV280121.1|EV280121
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAAGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|151408594|gb|EV278402.1|EV278402
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|19052548|gb|BM731215.1|BM731215
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAACGCAAGTTGACTCATTATCCAAAGAAATGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|213604537|gb|DB970657.1|DB970657
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacacttggtttagattttgttgtataatctttgattcatacatttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAG
                              ctttgat  putative branch site (score: 5)
               attttgttgtataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcaatagttttagaaaatcaaattgaattaattattttgaatattactcataatgcatatataatccttttatgaaggtgttttaatatcaacacttggtttagattttgttgtataatctttgattcatacatttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA