1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatctttagttttgaatcttcactgttctaaatttacccattttcacttttttaagtgtttttaggagtcggggaataacaatcattttaggagttatttgttttctaatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACCGCTTTAGCTGCAGCGGAACTCTCCATTCAAGCTG
species | Glycine max |
transcript | GLYMA15G41690.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAAEST: gi|213614121|gb|DB964893.1|DB964893
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAAEST: gi|209725352|gb|BW651520.1|BW651520
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAAEST: gi|209708413|gb|BW665388.1|BW665388
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAAEST: gi|15337286|gb|BI497942.1|BI497942
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: TANGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAAEST: gi|298188148|gb|HO034841.1|HO034841
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAGGCCCTCTGAAEST: gi|151395152|gb|EV265023.1|EV265023
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
taggagtcggggaataacaatcattttaggagttatttgttttctaatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACCGCTTTAGCTGCAGCGGAACTCTCCATTCAAGCTG
ttctaat putative branch site (score: 2)
ttttcta CT-rich tract
agttatttgttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctttagttttgaatcttcactgttctaaatttacccattttcacttttttaagtgtttttaggagtcggggaataacaatcattttaggagttatttgttttctaatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACCGCTTTAGCTGCAGCGGAACTCTCCATTCAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG