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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaccagaaaatcattgtttcatgatatatgttggatcatatttatgtcataaattttcatttacattgccattctattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG

Basic information

species Glycine max
transcript GLYMA15G40060.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40060.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 3'ss of exon 7
------gttagaccagaaaatcattgtttcatgatatatgttggat-catatttatgtcataaattttcatttacattgcca--ttctattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG
       |  | || |||| |    ||||    ||   |    ||   |  |   | | || | || ||   || | || ||  ||||  ||| ||||||   ||||||||||| || ||||| || |||||||| || || || |||||||| ||||||||||||
gtcagcatagggcctgaaacttgaagttttcaaatcagttccagagataggtggctttaatgatttctccaata-actgacagtttctcattttcagGTTTCTCGCCTGAGGCTTTTAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314632|gb|GR829625.1|GR829625
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|7588858|gb|AW704644.1|AW704644
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|58020690|gb|CX707432.1|CX707432
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|19053081|gb|BM731748.1|BM731748
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|151403013|gb|EV272826.1|EV272826
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|14989895|gb|BI315576.1|BI315576
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGNGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|58020886|gb|CX707628.1|CX707628
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|19270477|gb|BM886733.1|BM886733
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|58020497|gb|CX707239.1|CX707239
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|298191171|gb|HO038650.1|HO038650
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
EST: gi|8284333|gb|BE021892.1|BE021892
EST:     GTTTCTCAAGCTGAAGTGAAGAANNNNNNNGAATCAGCTTGTGGCGAG                         GTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT
genomic: GTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGgttagaccag ... tattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggatcatatttatgtcataaattttcatttacattgccattctattttacagGTTATGCGCCTGAGGCTCTTGGGGGACCACGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATG
                                          ttctatttt  CT-rich tract
        atatttatgtcataaa  TA-rich tract