1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagaaatacaaaccttcattatcagtctaacaataactttatttcatagccatcaatatcttcgtagattaaaatgcttaatattttccatacttggcagCCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAAGGAGATTATTAAATCACATTGTCCTGAACCAGCCCACGATATTCAG
species | Glycine max |
transcript | GLYMA15G34620.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTACAAACAAATTTCCTCAAAGGTTTGAAGTCTATCATGTTCTTAATAAG CCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAAGGAGATTATTEST: gi|151411830|gb|EV281641.1|EV281641
genomic: TTACAAACAAATTTCCTCAAAGGTTTGAAGTCTATCATGTTCTTAATAAGgttagttgct ... tacttggcagCCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAAGGAGATTATT
EST: TTACAAACAAATTTCCTCAAAGGTTTGAAGTCTATCATGTTCTTAATAAG CCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAAAGGAGATTAT
genomic: TTACAAACAAATTTCCTCAAAGGTTTGAAGTCTATCATGTTCTTAATAAGgttagttgct ... tacttggcagCCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAA-GGAGATTAT
atagccatcaatatcttcgtagattaaaatgcttaatattttccatacttggcagCCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAAGGAGATTATTAAATCACATTGTCCTGAACCAGCCCACGATATTCAG
gcttaat putative branch site (score: 4)
ttttccat CT-rich tract
tagattaaaatgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaaatacaaaccttcattatcagtctaacaataactttatttcatagccatcaatatcttcgtagattaaaatgcttaatattttccatacttggcagCCTCCTGAACAATGGAATGGTGGCATTGGATTTATATCGAAGGAGATTATTAAATCACATTGTCCTGAACCAGCCCACGATATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - -acaaacc
- - - - - - - - - - - - - - - - - - - - - - - - -ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctt