Sequence
atgc intronic sequence ATGC exonic sequencegtgtgtgattctttaagatgattcatatgccttttttatttattttgtatagcattgagcaaccaatggttttcaacggatgtagGGATATTGGATGGTCAAGCGAGCTGTAGGAACAAAAGCTTGCCTACTAGGGAAAGCTGTCACTTGTAAATACTTTAAACAAGATAATTTTTTTGAG
Basic information
species | Glycine max |
transcript | GLYMA15G26120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G26120.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G160927_T01 (Zea mays), 3'ss of exon 7
gtgtgtgattctttaagatgattcatatgccttttttatttattttgtatagcattga-gcaaccaatggttttcaacggatgtagGGATATTGGATGGTCAAGCGAGCTGTAGGAACAAAAGCTTGCCTACTAGGGAAAGCTGTCACTTGTAAATACTTTAAACAAGATAATTTTTTTGAG
|| || | | | || |||| || || || || | ||| || | | | | | | | || |||| ||||||||||| ||||| ||||||||||||||||||||||| || || ||||| || || || || || || || ||||| ||| | |||
--gtatgcatgtcttagctgat--gtacagtattaccatgcatgtggtaatttgttcatgtcaacttttgcatgaaattatgtcagGGTTATTGGATGGTTAAGCGTGCTGTAGGAACAAAAGCTTGCCTTCTGGGCAAAGCAGTAACGTGCAATTATCTTCGCCAGGATAACTTTCTGGAG
upper sequence: GLYMA15G26120.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G35180.4 (Arabidopsis thaliana), 3'ss of exon 22
gtgtgtgattctttaagatgattcatatgccttttttatttattttg---tatagca---ttgagcaaccaatggttttca--acggat-gtagGGATATTGGATGGTCAAGCGAGCTGTAGGAACAAAAGCTTGCCTACTAGGGAAAGCTGTCACTTGTAAATACTTTAAACAAGATAATTTTTTTGAG
||| | || ||| || | ||| || ||||| | || || | ||| | || |||||||||||||||||||||| ||||| ||||||||||| ||| | || || |||||||| || ||||| ||| | | || ||||| ||||| |||
------------gtaaagaaactc---tgctcttctcgtttccactgaaatatagtaaacttagtcacattgtaaccgtcatggtgaatcacagGGATATTGGATGGTCAAGCGGGCTGTTGGAACAAAAGCCTGCTTGCTCGGTAAAGCTGTGACCTGTAAGTACCTGAGGCAGGATAACTTTTTGGAG
upper sequence: GLYMA15G26120.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S376_46V6.1 (Physcomitrella patens), 3'ss of exon 18
-----------------------gtgtgtgattctttaagatgattcatatgccttttttatttattttgtatagcattgagcaaccaatggttttcaacggatgtagGGATATTGGATGGTCAAGCGAGCTGTAGGAACAAAAGCTTGCCTACTAGGGAAAGCTGTCACTTGTAAATACTTTAAACAAGATAATTTTTTTGAG
||| | | || |||| || ||| | | || | |||| | || | ||| || || | ||||| ||||||||||| ||||| ||||| || |||||||| |||||||| || ||||||||||||||||| ||||| |||||||||| |||||
tgtttattatggcacgtttgattatgttttctctttcaagacga---ataggtaatacctact-gccttgtgaatcagtttctaac--attacattgattt--cttagGGTTATTGGATGGTGAAGCGTGCTGTTGGTACAAAAGCATGCCTACTGGGCAAAGCTGTCACTTGTAATTACTTGCGTAGAGATAATTTTCTTGAG
upper sequence: GLYMA15G26120.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S141_3V6.1 (Physcomitrella patens), 3'ss of exon 18
-----------------------gtgtgtgattctttaagatgattcatatgccttttttatttatt-ttgtatagcattgagcaaccaatggttttcaacggatgtagGGATATTGGATGGTCAAGCGAGCTGTAGGAACAAAAGCTTGCCTACTAGGGAAAGCTGTCACTTGTAAATACTTTAAACAAGATAATTTTTTTGAG
| ||| || || ||||| |||| | | || | | ||| | | || |||| | ||||| | |||| || |||||||| ||||| ||||| || |||||||| || ||||| || || |||||||||||||| ||||| ||||||| || |||||
tttttttgaaagacaatgtgattttatgttttttttcgagatgg-----atgcatgatgcatacactgttgggaatcttttctcaac--acctcgttcaatccac--agGGTTACTGGATGGTGAAGCGTGCTGTTGGTACAAAAGCCTGTCTACTGGGTAATGCTGTCACTTGTAATTACTTGCGCAAAGATAACTTCCTTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttttatttattttgtatagcattgagcaaccaatggttttcaacggatgtagGGATATTGGATGGTCAAGCGAGCTGTAGGAACAAAAGCTTGCCTACTAGGGAAAGCTGTCACTTGTAAATACTTTAAACAAGATAATTTTTTTGAG
ttatttattttgtata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtgattctttaagatgattcatatgccttttttatttattttgtatagcattgagcaaccaatggttttcaacggatgtagGGATATTGGATGGTCAAGCGAGCTGTAGGAACAAAAGCTTGCCTACTAGGGAAAGCTGTCACTTGTAAATACTTTAAACAAGATAATTTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG