1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttactaaataggccataacttccatatctgctgctttagttttctggcatcatacattgaagcatagacttataaccattaattccttctactttttagTTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATACCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAG
species | Glycine max |
transcript | GLYMA15G23420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTAAACGCATAAAGCTTGAACCAAGTAGGCCTGGAGGAGCTCGTAGAAA TTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTEST: gi|254337513|gb|GR845190.1|GR845190
genomic: GGTAAACGCATAAAGCTTGAACCAAGTAGGCCTGGAGGAGCTCGTAGAAAgtgcgtacac ... tactttttagTTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTT
EST: GGTAAACGCATAAAGCTTGAACCAAGTAGGCCTGGAGGAGCTCGTAGAAA TTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTT
genomic: GGTAAACGCATAAAGCTTGAACCAAGTAGGCCTGGAGGAGCTCGTAGAAAgtgcgtacac ... tactttttagTTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTT
tggcatcatacattgaagcatagacttataaccattaattccttctactttttagTTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATACCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAG
ttccttctacttttt CT-rich tract
ttataaccattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttactaaataggccataacttccatatctgctgctttagttttctggcatcatacattgaagcatagacttataaccattaattccttctactttttagTTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATACCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - acttcca
- - - - - - - - - - - - - - ctgctgc
- - - - - - - - - - - - - - - - - - - - - ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattaa