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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cactccttttacttgttctccatttattattctactactgattcaacttacacttttgatttatctcattggcaatggaatgttattttgtggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCTTCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT

Basic information

species Glycine max
transcript GLYMA15G23150.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23150.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g52340.2 (Oryza sativa), 3'ss of exon 6
cactccttttacttgttctccatttattattctactactgattcaacttacacttttgatttatctcattggcaatggaatgttattttgtggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCTTCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
         |   |||||    | |     | | |   | ||   |   ||   | ||||| |      |  |  ||||||||||||||        ||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||| || ||||||||||| || |||||||| |||||||| ||||||||||||
--------gtgtgtgttcatgttattcatgttttcagttcataatatgcacttgtctgattcaaaatcatatccttggaatgttatttt------cacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTCCAAGTTCTTGGTCTCGGTACTGCATTGAAGATTCTTTTCTCTGTTGAT

upper sequence: GLYMA15G23150.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G108115_T01 (Zea mays), 3'ss of exon 7
------cactccttttacttgttctccatttattattctactactgattcaacttacacttttgatttatctcattggcaatggaatgttattttgtggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCTTCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
       ||   |||    ||||||| | || | |||  | ||  ||| ||   |  ||     | ||   || ||  | ||| ||    ||||| |  | |  |||||| | ||||| ||||| ||||| ||||| || ||| | ||||| ||||| || |||| |||||||||||||||| | || ||||| ||||||||||||
gtttgtgacatatttcctgtgttctcaacttctcatttcatta--gatgcattatgaacc----acttgaatccttacccatgtaac---attttatttatt--agTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCTCCAAGTTCATGGTCTTGGAACTGCACTGAAAATTCTTTTCTCTGTTGAT

upper sequence: GLYMA15G23150.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G521844_T01 (Zea mays), 3'ss of exon 7
cactccttttacttgttctccatttattattctactactg-attcaacttacacttttgatttatctcattggcaatggaatgttattttgtggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCTTCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
            ||||     |||| |  |  |  || |  ||   |   | |      | || | || ||  | ||| ||  || | |||    ||  |||||| | ||||| ||||| ||||| ||||| || ||| | ||||| ||||| || |||||||| |||||||||||  | || ||||| ||||| ||||||
----------gtttgtgacatatttctggtgttcttatttcataagatacatatgaaccacttgtatccttacccatgtaacattttcttg----at-tagTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCTCCAAGTTCTTGGCCTTGGAACTGCTCTGAAAATTCTTTTCTCCGTTGAT

upper sequence: GLYMA15G23150.2 (Glycine max), 3'ss of exon 7
lower sequence: AT2G38960.2 (Arabidopsis thaliana), 3'ss of exon 7
cactccttttacttgttctccatttattattct--actactgattcaacttacactt-----ttgatttatctcattggcaatggaatgttattttgtggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCTTCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
   ||||| |    || ||  |  || | ||||  |  | ||||  || || ||||       | | |||  |  ||    ||    ||     |  || | ||||||||| | ||||| |||||||| ||||||||||| ||  ||||||| ||||||||| |||| ||||| || |||||||| || ||||| ||| ||||  ||
--gtccttct-tgagtcctttaactaattttcttgagcaatgataaaatttccactgactagctaagttaaattcttttttattacttgaatcgtcttgcattgcagTGCAATAATGGACTGTGTAGGCTGTGAGAAATGCCGTCTATGGGGAAAGCTTCAGATTCTCGGTCTCGGTACTGCATTGAAAATTCTATTCACTGTCAAT

upper sequence: GLYMA15G23150.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0003g03950.t01 (Vitis vinifera), 3'ss of exon 7
cactccttttacttgttctccatttattattctactactgattcaacttacacttttgatttatctcattggcaatggaatg-ttattt---tgtggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCTTCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
 | |     ||    || || || |  | ||  | | |||    |   |  ||   || || ||  |  || |||||  |   ||||||   | |  | || |||||||||||||| ||||| || |||||||| |||||| | ||||| ||||||||||||| |||||||||||||||||| || || || |||||| |||||
aattttcactatgcatt-tcaatgtgatctttgattgctgcactattattgac---tggttcatgcctgtgccaatgatacaattatttctgttttcattgtagTGCATTGATGGACTGTGTTGGCTGTGAGAAGTGTCGACTTTGGGGAAAGCTTCAGGTTCATGGTCTTGGAACTGCATTGAAAATCCTTTTCTCTATTGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575810|gb|CX548781.1|CX548781
EST:     AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG                         TGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
EST: gi|15814993|gb|BI787268.1|BI787268
EST:     AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG                         TGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
EST: gi|15815000|gb|BI787275.1|BI787275
EST:     AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG                         TGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
EST: gi|58023979|gb|CX710720.1|CX710720
EST:     AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG                         TGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
EST: gi|11274390|gb|BF324743.1|BF324743
EST:     AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG                         TGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttacacttttgatttatctcattggcaatggaatgttattttgtggaatgcagTGCATTGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGTAAGCTTCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
        ttttgatttat  TA-rich tract