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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttcttgtatggctaagcttaatgaagtgcttcatattttttcttggaatacaagtgttctattctgatttctctgccttttatatgctcacatatatcctattttctttcagACAGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAACTTGCAGCCTTGTCTCCATCTTTACAAAGTGATTTCAGACGAATTTTAGAAACAGCACCCCGCC

Basic information

species Glycine max
transcript GLYMA15G20400.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207839794|gb|GD810883.1|GD810883
EST:     AAATTTTGGAAGCAACATCCTGCACTGGTTAAG                         ACAGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAACTTGCAGCCTTGTCT
genomic: AAATTTTGGAAGCAACATCCTGCACTGGTTAAGgtatcttctt ... tttctttcagACAGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAACTTGCAGCCTTGTCT
EST: gi|27426194|gb|CA937714.1|CA937714
EST:     TCAAGCAGGAGCAGGCTAAATTTTGGAAACAACATCCTGCACTGGTTAAG                         ACAGAGCTGNTAGTTCAAGCTCAGTTGACTCGTGAA
genomic: TCAAGCAGGAGCAGGCTAAATTTTGGAAGCAACATCCTGCACTGGTTAAGgtatcttctt ... tttctttcagACAGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctattctgatttctctgccttttatatgctcacatatatcctattttctttcagACAGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAACTTGCAGCCTTGTCTCCATCTTTACAAAGTGATTTCAGACGAATTTTAGAAACAGCACCCCGCC
                           tgctcac  putative branch site (score: 2)
                                     tatcctattttctttc  putative PPT
                                  atatatcctatttt  TA-rich tract