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...tgtgatatatgttcacttgccagattcttgagtgtttcaaattttcaatgacaatcgtgttatctttttaatatatgtttttctatgacatccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTAGCTGAAGTTCTTGAGAGGAACAAATTACCTGGTGCAATATTCACCTCT
species | Glycine max |
transcript | GLYMA15G19670.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGEST: gi|254315873|gb|GR825682.1|GR825682
genomic: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAA-GGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAG
EST: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAA-GCTAGTEST: gi|254334456|gb|GR844241.1|GR844241
genomic: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGT
EST: CTAGGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTEST: gi|192309267|gb|FG999144.1|FG999144
genomic: CTAGGATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGT
EST: TGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTTGTEST: gi|192311335|gb|FK003792.1|FK003792
genomic: TGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGT
EST: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTEST: gi|151412062|gb|EV281874.1|EV281874
genomic: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGT
EST: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTEST: gi|27446368|gb|CA953491.1|CA953491
genomic: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGT
EST: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTEST: gi|254317668|gb|GR826652.1|GR826652
genomic: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGT
EST: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTG GAAGG-TGCTCCAACAACTCCTTTGATA-CTATTGCTGTGACAAAGCTAGT
genomic: GATGGAATGCTTGCATTGCTTTAGTCTGTGGTAACTGTGTTGTGTGgtatgtctat ... tccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGT
caatgacaatcgtgttatctttttaatatatgtttttctatgacatccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTAGCTGAAGTTCTTGAGAGGAACAAATTACCTGGTGCAATATTCACCTCT
ttttaat putative branch site (score: 3)
tgttatctttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgatatatgttcacttgccagattcttgagtgtttcaaattttcaatgacaatcgtgttatctttttaatatatgtttttctatgacatccattaaagGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTAGCTGAAGTTCTTGAGAGGAACAAATTACCTGGTGCAATATTCACCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA