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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctaaagaagttaagagtgccatttgccttttactaccctgtatcttatacctgtggctaatttttaagcttatctgtgtgtttaaatctatgtaaatagGGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG

Basic information

species Glycine max
transcript GLYMA15G17840.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G17840.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g01340.t01 (Vitis vinifera), 3'ss of exon 7
----------cctaaagaagttaagagtgccatttgccttttactaccctgtatcttatacctg---tggctaatttttaagcttatctgtgtgtttaaatcta------tgt---aaatagGGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG
            |||      |     |  |  |  || | |    | || |  |  | ||      |||   | ||||    | | ||| || || | ||         |||   ||| || |||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||||||| || || | |||| | ||
gtaagttgtttttaacctctctctctctctctctctccctctctctctctctcacacacacacacattggaggaatttttccttgagctgggttttaatattggatggcttgtttgaaacagAGGTGTTCCACCTGGTGCTCGATTTGATCCTTATGGCCCACCTGGCGTTCCTGGTTTTGAGCCTAATAGATTTACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193482015|gb|FK444418.1|FK444418
EST:     GGAAGGGAAGGTTCCAAGTTCTTGCTCTGAGGCAATGTATCTTCAATGAG                         GGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCC
genomic: GGAAGGGAAGGTTCCAAGTTCTTGCTCTGAGGCAATGTATCTTCAATGAGgtgtacatca ... atgtaaatagGGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatacctgtggctaatttttaagcttatctgtgtgtttaaatctatgtaaatagGGGTGTTCCTCCCGGTGCACGATTTGATCCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG
          ggctaat  putative branch site (score: 3)
                                    tttaaatctatgtaaa  TA-rich tract