1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...catccatttatgtatatatgtatgtacacacacacacatgcctttatctgcatttttaattactgaatttttacaagctgctgcttctgttatgctatagGTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAAT
species | Glycine max |
transcript | GLYMA15G15310.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGACACTTTAGAG GTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTEST: gi|23063995|gb|BU578768.1|BU578768
genomic: CAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGACACTTTAGAGgtgccttaat ... tatgctatagGTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTT
EST: CAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGACACTTTAGAG GTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTEST: gi|13562493|gb|BG550713.1|BG550713
genomic: CAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGACACTTTAGAGgtgccttaat ... tatgctatagGTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTT
EST: CAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGACACTTTAGAG GTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAA
genomic: CAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGACACTTTAGAGgtgccttaat ... tatgctatagGTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAA
atctgcatttttaattactgaatttttacaagctgctgcttctgttatgctatagGTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAAT
ttttaat putative branch site (score: 3)
cttctgtt putative PPT
atttttaattactgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catccatttatgtatatatgtatgtacacacacacacatgcctttatctgcatttttaattactgaatttttacaagctgctgcttctgttatgctatagGTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
catccat
- - - - - - - - -atgtatg
- - - - - - - - - - - - tacacac
- - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc