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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaagcatgataatatatgataaaatttatctggttttgcattctgaatctagtatccttgtaaattaaactgttattaatatggcatttctctccattgtagGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAG

Basic information

species Glycine max
transcript GLYMA15G13910.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772188|gb|BG237115.1|BG237115
EST:     CTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAG                         GCCATATCTGCTAT-GCTTGGGGAACAGAAACTTGTCCAAAG
genomic: CTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGgtttgaagca ... tccattgtagGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAG
EST: gi|254340468|gb|GR850770.1|GR850770
EST:     GTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAG                         GCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAG
genomic: GTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGgtttgaagca ... tccattgtagGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagtatccttgtaaattaaactgttattaatatggcatttctctccattgtagGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAG
                          tattaat  putative branch site (score: 2)
                                     catttctctccatt  putative PPT
          ttgtaaattaaactgt  TA-rich tract