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gttggtgtcactatatgatcttgggaaactgttggtctataccttctatttatagttgtaaaatcagaaagagtaataattttctttctgaaattgatttggtgctattgcttaatgcctgcagACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG
species | Glycine max |
transcript | GLYMA15G13700.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAG ACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAGEST: gi|19270806|gb|BM887062.1|BM887062
genomic: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAGgttggtgtca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAG
EST: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAG ACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAGEST: gi|192331297|gb|FK021008.1|FK021008
genomic: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAGgttggtgtca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAG
EST: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAG ACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAGEST: gi|7030359|gb|AW460142.1|AW460142
genomic: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAGgttggtgtca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAG
EST: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAG ACTGTCCAGACAACTATAATAAGGAGTAACTTGAATGCAGTCTGGAATGAG
genomic: GAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAGgttggtgtca ... atgcctgcagACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAG
agagtaataattttctttctgaaattgatttggtgctattgcttaatgcctgcagACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG
gcttaat putative branch site (score: 4)
aataattttctttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgtcactatatgatcttgggaaactgttggtctataccttctatttatagttgtaaaatcagaaagagtaataattttctttctgaaattgatttggtgctattgcttaatgcctgcagACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG