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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctttcaaaccatcaatctaatgttcttaaagcaatatgcagttttgcactctcttgacataaacaaaatatctaacttgatctctaaatttgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC

Basic information

species Glycine max
transcript GLYMA15G12950.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 3'ss of exon 8
----------------------------gtattctttcaaaccatcaatctaatgttcttaaagc-aatatgcagtttt--gcactctcttgacataaacaaaatatctaacttgatctctaaatttgt---------agGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC
                             |     |  ||| ||   |  ||||      |  || |||   | |||    ||   ||  |||   | |||  ||   |   || |  |  ||   |||         |||| ||||||| ||| ||||||||||| ||||||||||||||| |  |||| || |  | |||| ||||| |||| || |||||||| |||    | || |
gtaatgcataatgtagtttgttttattaatgccactcaaaatcaaataaataatacataaatcgctaattgactgttcctggcttcctgctgaagaatacattattatttgtttaaaattaaatcatgtttattgtacagGGGGATAAAAGTATAATAAAATTTGAGGGTGATCACAACTCCCCAAGACCTCAATCATATTATGATTCAGTTTCAATGTTCTTCTATAATACTTTGCATC

upper sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 8
gtattctttcaaaccatcaatctaatgttcttaaagcaatatg-cagttttgca-ctctcttgacataaacaaaatatctaact--tgatctctaaatttgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC
    || || ||   || |     |  ||  ||    | |||  | | |    | ||  || | |||   |  |||   |  ||  |   || |   | || |||| ||||||||||| || ||||||||||||||||| || ||  |  |||| || |  | |||| ||||| |||| || |||||||||||     | || |
----tcctttaacaaataacatggagattggtagtcgattatttctgctgcatatcttgctagccattttcttaattattgcctcatagcctgtttgtgtgcagGGGGATAAAAATATAATTAAATTTGATGGTGATCATAATTCTCCAAGACCTCAATCATATTATGATTCAGTTTCTATATTCTTCTACAAATCTTTGCATC

upper sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
gtattctttca-aaccatcaatctaatgttcttaaagcaatatgcagttttgcactctcttgacataaacaaaatatctaacttgatctctaaatttgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC
   | ||| || ||       | | ||||||   ||||| |||  |   ||   |  | ||          |  || ||| |||   ||  ||||||| ||||||| ||||||||||| || |||||||||||||||||||| || || || ||||  | |||| ||||| | |   | |||||||||||||| || | ||
--gtacttacataattgcggtttttatgttc---aagca-tatcaatcctttttcattttt----------atgtacctatctt---ctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC

upper sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
gtattctttcaaaccatcaatctaatgttcttaaagcaatatgcagttttgcactctcttgacataaacaaaatatctaacttgatctctaa-atttgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC
||||| | |||  |       ||  || |   |    ||   |  |  ||||| | |   | | | |  ||||| | || | |  | | ||  || || |||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| | |||| ||||| ||||||| |||||||||||||| || || |
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaat-tggcgtctttatgaaaat-tttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgcactctcttgacataaacaaaatatctaacttgatctctaaatttgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC
                  ataaacaaaatatcta  TA-rich tract