1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttggatttttggtttttgcagtctactgtttaattaatgttagtttcatgttgaatagatgcatatatgattgcttagttgatttctttctctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA
species | Glycine max |
transcript | GLYMA15G12220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGAEST: gi|31463880|gb|CD405908.1|CD405908
genomic: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
EST: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGAEST: gi|22932404|gb|BU549543.1|BU549543
genomic: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
EST: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG TTGTTGNNAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGAEST: gi|13312864|gb|BG406515.1|BG406515
genomic: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
EST: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGAEST: gi|22928039|gb|BU545178.1|BU545178
genomic: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
EST: GCCAAGCTGTCAAG TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGAEST: gi|6724491|gb|AW308890.1|AW308890
genomic: GCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
EST: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGAEST: gi|26045902|gb|CA783326.1|CA783326
genomic: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
EST: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAG TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGAEST: gi|151403296|gb|EV273106.1|EV273106
genomic: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
EST: CTAAGCTGTTGGAATCTTCCAATTATATTACAAAGCGCCAAGCTGTCAAG TTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
genomic: CTAAGCTGTTGGAATCTTCCAATTATATTACAAGGCGCCAAGCTGTCAAGgttctatata ... tctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGA
tcatgttgaatagatgcatatatgattgcttagttgatttctttctctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA
agttgat putative branch site (score: 5)
ttgatttctttctctt CT-rich tract
atatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggatttttggtttttgcagtctactgtttaattaatgttagtttcatgttgaatagatgcatatatgattgcttagttgatttctttctctttcacagTTGTTGGGAGATATGTTACTTGATCGTTCAAATTCAGCTGTAATGACACGATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT