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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcgttttgcacccaatgtataaataaaagatactaaattttgttaactgtgtttgtgagagcatggtaccggctctacttagcaggtcttattcgcataaatatgatgatattaacttcaagaatattttggtttcatccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC

Basic information

species Glycine max
transcript GLYMA15G11970.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11970.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 3'ss of exon 8
gtaagttgcgttttgcacccaatgtataaataaaagatactaaattttgttaactgtgtttgtga--gagcatggtaccggctctacttagcaggtcttattcgcataaatatgatgatattaacttcaagaatattttggtttcatccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
                                               ||   |    |||||  |   | || ||   |   ||  || ||  ||  |   |  | |    |||  | | |  || |||    | ||||   | |||   ||  |||| | || |||||| ||||| || |||||||||||| | || ||||| ||||| ||||||||||| ||||| ||||| |||||  | ||     ||||||
-----------------------------------------------tgaagaaaaagtttggaactaaacaaggcctctattcctctcagttggcatgcatgacttcctaatggagctttctacgtca----tgtttt---tccatt--ttgtagACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATC

upper sequence: GLYMA15G11970.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagttgcgttttgcacccaatgtataaataaaagatactaaattttgttaactgtgtttgtgagagcatggtaccggctctacttagcaggtcttattcgcataaatatgatgatattaacttcaagaatattttggtttcatccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
      || ||  |   |  | ||| | |  || |  |   |  ||||||| | |  |||| |  |   | |            || |  |  || |||    || |  |||  || | | | |   ||  ||||     || ||   || ||||| |  |  ||||||||||| ||||||||||| |||||| | ||||||||||| || |||||||| |||||||||||||| ||| |   |||||| || |
-----gtgagtaatatccttactgtttcagaaacacttgtgagtttttgtttattccgttttttcggtgaaga----------gctaaagaactcatatctatatcaccatg--gaaaatgattctcagtttattgatactttatgatttgcagACTAGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACC

upper sequence: GLYMA15G11970.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------gtaagttgcgttttgcacccaatgtataaataa-aagata---ctaaattttgttaactg-----tgtttgtgagagcatggtaccg-----gctctact-tagcaggtctt--attcgcataaatatgatgatatt---aacttcaagaatattttg-gtttcatccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
                         ||   |   |   ||| |  ||| | | ||| |  ||||    ||   ||||  ||  |      ||||    | |   || ||        |||||  | | | || | |   | ||            |  ||||    | |     ||||||||   |||  ||  || |||||  | | ||| |||||||| ||||| ||||| |||||| | ||||| |||||||| || ||||||||||| |||||||||||  |   |||| |||  |
gtaagtggactgagtattttagtttgtttatgatgagatgc-ctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttgagagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgcataaatatgatgatattaacttcaagaatattttggtttcatccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC
                 tattaac  putative branch site (score: 1)
                                        tttcatccctttc  putative PPT
                atattaacttcaagaa  TA-rich tract