Sequence
atgc intronic sequence ATGC exonic sequence...ttagaattgcctagttttgttactctaatttctgttaggtgtaacattagcttttggtttttcccccttgttttttttttccaaattgtattttgaatagTGCTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCG
Basic information
species | Glycine max |
transcript | GLYMA15G10940.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 7
ttagaattgcctagttttgttactctaatttctgttaggtgtaacattagcttttggtttttcccccttgttttttttttccaaattgtattttgaatagTGCTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCG
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attgttttctttattattattattatgttctgtagtatttggaagtttgaacaattttcctgtgatgaactaatttatgaatattttcctctctttttagTGCTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCA
upper sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 7
lower sequence: PP1S80_71V6.2 (Physcomitrella patens), 3'ss of exon 8
-----------------------ttagaattgcctagttttgttactctaattt-ctgttaggtgtaacattagcttttggtttttcccccttgttttttttt--------tccaaat---tgtattttgaatagTGCTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCG
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gttttttcaatccagtcttatcgtttaaatggcatcatttgattttaatgacatattgctccactttgaa--agttctttgttctaacaaagtgccctaaccaaaaaagaattgaaatgcttggctgttgaatagTGCGGTGGATCAATTTAAGAGACAATTTGCTCACCTTGAGGAACATTATGGCAAGGGTGGTAACAATCCTCCCCTTGAGAGGCAACATGCCTCACTCCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193393509|gb|FK358857.1|FK358857EST: TTGAAGGAATTTCTAGAAGGAGCAGAGCCAACAGGTTTCATGTATCCAAG TGCTGTGGATCACTTCAAGAAACAATTTGCATATCTTG
genomic: TTGAAGGAATTTCTAGAAGGAGCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtcta ... ttttgaatagTGCTGTGGATCACTTCAAGAAACAATTTGCATATCTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attagcttttggtttttcccccttgttttttttttccaaattgtattttgaatagTGCTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCG
ttttttttttccaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttagaattgcctagttttgttactctaatttctgttaggtgtaacattagcttttggtttttcccccttgttttttttttccaaattgtattttgaatagTGCTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG