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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattagtggaattcactttagtaatgattttggtcatgatgtgactaggctacatctgatcaaggatcctaatctgtatgtcttgtgttacttttaccagTTACGTACCCAGGCACTTGCTTCTCTGCATTCTGGTCTTCAGAATAGCCAAGGTCTCCCTGTTGCTCATGTTGCTAACTGGCTTGCTATGGAG

Basic information

species Glycine max
transcript GLYMA15G10760.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g02350.t01 (Vitis vinifera), 3'ss of exon 10
-------cattagtggaattcactttagtaatgattttggtcatgatgtgactaggctacatctgatcaaggatcctaatctgtatgtcttgtgttacttttaccagTTACGTACCCAGGCACTTGCTTCTCTGCATTCTGGTCTTCAGAATAGCCAAGGTCTCCCTGTTGCTCATGTTGCTAACTGGCTTGCTATGGAG
         | |||      ||| |  || || |  |||  |||| |   |   ||  |||  || |   |  |     |||  || | || || |  || |  |||||||| || ||||||||||||||||| || | ||| || ||||||| |||||||||||||||||| |||||||| |  |||||||  ||||||
atgtttgtctcagttacggacacatatgttat-acattgaacatgct--catgtggacacacatggtttggtgtt---gtct-catatgttatgctgtttgtttcagTTACGAACACAGGCACTTGCTTCTCTACACTGTGGCCTACAGAATAACCAAGGTCTCCCTGTTGCCCATGTTGCCAGGTGGCTTGGGATGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggctacatctgatcaaggatcctaatctgtatgtcttgtgttacttttaccagTTACGTACCCAGGCACTTGCTTCTCTGCATTCTGGTCTTCAGAATAGCCAAGGTCTCCCTGTTGCTCATGTTGCTAACTGGCTTGCTATGGAG
                     tcctaat  putative branch site (score: 2)
                                          ttactttt  putative PPT
                                          ttactttta  TA-rich tract