1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctaatgagaatcacctgtttttttctcacttttatttaggatgctatcactgcgtaactcatcattgtaaaagcatgcctttgtatatttccttagcagGAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGGAAGTAGGGTGGGAGCCCAAGTACTCTAGCTTTGCTCATTTCCTTGAGAC
species | Glycine max |
transcript | GLYMA15G10460.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTAGTTTACAAAATTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAG GAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGGEST: gi|31310358|gb|CD395561.1|CD395561
genomic: TCTAGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAGgtaataacga ... tccttagcagGAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGG
EST: TCTAGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAG GAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGGEST: gi|10231274|gb|BE800171.1|BE800171
genomic: TCTAGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAGgtaataacga ... tccttagcagGAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGG
EST: TCTAGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAG GAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGG
genomic: TCTAGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAGgtaataacga ... tccttagcagGAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGG
tatcactgcgtaactcatcattgtaaaagcatgcctttgtatatttccttagcagGAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGGAAGTAGGGTGGGAGCCCAAGTACTCTAGCTTTGCTCATTTCCTTGAGAC
gcgtaac putative branch site (score: 3)
tatttcctt putative PPT
tttgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaatgagaatcacctgtttttttctcacttttatttaggatgctatcactgcgtaactcatcattgtaaaagcatgcctttgtatatttccttagcagGAACCGATGATCCTCTAGGCAAGAGATTGAACAACTCCAGAACACGCCAGGAAGTAGGGTGGGAGCCCAAGTACTCTAGCTTTGCTCATTTCCTTGAGAC
- - - - - - cacctgt
- - - - - - - - - - - - - - - - - - - -ggatgct
- - - - - - - - - - - - - - - - - - - - - - - -tcactgc