Sequence
atgc intronic sequence ATGC exonic sequencegtaagctaaactttgcgtttccttgttagatgagatgcaactggttctggttcttttctcaaccttgatggctaacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA
Basic information
| species | Glycine max |
| transcript | GLYMA15G08090.1 |
| intron # | 7 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os05g45490.1 (Oryza sativa), 3'ss of exon 7
gtaagctaaactttgcgtttccttgttagatgagatgcaactggttctggttcttttctcaaccttgatggctaacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA
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gtcag-tgatctcattgaagtatggcgaaaacagttcagttactttctgagattttaactgtcctttttgcattggtt-tagATGTCCCTGAAGGTTGTGTCATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGCCTTTGGTTCAATGAAGTTGACCGTTTCACCTCCAGGGA
upper sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM5G891056_T01 (Zea mays), 3'ss of exon 7
gtaa--gctaaactttgcgtttccttgttagatgagatgcaactggttctggttcttttctcaaccttgatgg---ctaacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA
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gtagttacttctccctcctcatccgtgacctatta-atatttctaacactgtttacctgcctgatatcagtatactctgattgacagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA
upper sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagctaaactttgcgtttccttgttagatgagat-----gcaactggttctggttcttttctcaaccttgatggctaact-tgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA
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gtatgtctctttagcttattctgtctaaaatccccttttcgggatcaaacactaataatatagacaactatatggttgggctatgcagACGTACCCGAGGGTTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTCACTTGTCTTTGGTTCAACGAAGTTGACCGATTCACTTCTAGAGA
upper sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
gtaagct--aaactttgcgtttccttgttag-atgagatgcaactggttctggttctt------ttctcaaccttgatggctaacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA
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gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192297456|gb|FG989865.1|FG989865EST: GAATGAGGGACTGACTCCATATACAGAGGCCAAACTTCCTCTTATTAGCG ATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATC
genomic: GAATGAGGGACTGACTCCATATACAGAGGCCAAACTTCCTCTTATTAGTGgtaagctaaa ... taacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agatgagatgcaactggttctggttcttttctcaaccttgatggctaacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA
ggctaac putative branch site (score: 2)
ttctttt TA-rich tract
