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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgtgtaaactacttttctcaccatagatgcttgtcctcaaaagaatggtttcagactgagtattttggttgctgactacatatgaataatgtgtgcagGTTATCATAATGTTACGACTACCAGATGCTCAATGCAACCACAGAATGATAATCTTCATTCTTCTATTCAGTTTGATAACACTGCATTTCCACTACAAAA

Basic information

species Glycine max
transcript GLYMA15G07330.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534661|gb|EH262794.1|EH262794
EST:     TCCATTAACTACAGGGCAGCCTTCAATGAATCCAGCAGTAACAGTTGGAG                         GTTATCATAATGTTACGACTACCAGATGCTCAATGCAACCACAGAATGATA
genomic: TCCATTAACTACAGGGCAGCCTTCAATGAATCCAGCAGTAACAGTTGGAGgtatatagtt ... atgtgtgcagGTTATCATAATGTTACGACTACCAGATGCTCAATGCAACCACAGAATGATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggtttcagactgagtattttggttgctgactacatatgaataatgtgtgcagGTTATCATAATGTTACGACTACCAGATGCTCAATGCAACCACAGAATGATAATCTTCATTCTTCTATTCAGTTTGATAACACTGCATTTCCACTACAAAA
                          tgctgac  putative branch site (score: 2)
                                 tacatatgaataat  TA-rich tract