1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaataatttatatggttgaggaagaaagcattttggaagctgttttatgagtgcgtttattctgaatttgaattttgtgcagGATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGTTGAGGCAGATCCCCTGGCTCAGTCGGATGACCTCTTGAAAGTGTATAAC
species | Glycine max |
transcript | GLYMA15G05240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCCATTTTGATGTTATTGGAGTTGCCTTGTTCTTCAGCACAACATTCAG GATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGTEST: gi|120531534|gb|EH259667.1|EH259667
genomic: ACCCATTTTGATGTTATTGGAGTTGCCTTGTTCTTCAGCACAACATTCAGgtaataattt ... ttttgtgcagGATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGT
EST: ACCCATTTTGATGTTATTGGAGTTCCCTTGTTCTTCAGCACAACATTCAG GATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGTEST: gi|105633532|gb|DW246895.1|DW246895
genomic: ACCCATTTTGATGTTATTGGAGTTGCCTTGTTCTTCAGCACAACATTCAGgtaataattt ... ttttgtgcagGATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGT
EST: ACCCATTTTGATGTTACTGGAGTTGCCTTGTTCTTCAGCACAACATTCAG GATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGT
genomic: ACCCATTTTGATGTTATTGGAGTTGCCTTGTTCTTCAGCACAACATTCAGgtaataattt ... ttttgtgcagGATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGT
gcattttggaagctgttttatgagtgcgtttattctgaatttgaattttgtgcagGATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGTTGAGGCAGATCCCCTGGCTCAGTCGGATGACCTCTTGAAAGTGTATAAC
tttattctgaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttatatggttgaggaagaaagcattttggaagctgttttatgagtgcgtttattctgaatttgaattttgtgcagGATCTTGAACGTTCAATTGGGAGAGACTTCTAAGCGTGCCTGGCTTGGAGTTGAGGCAGATCCCCTGGCTCAGTCGGATGACCTCTTGAAAGTGTATAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT